FastQCFastQC Report
Wed 16 Nov 2022
EGAF00007405487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007405487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35764373
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTGTGTAATCTCGTAT3737331.0449868644418847TruSeq Adapter, Index 12 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTGTGTAATCGCGTAT1371150.38338432495377456TruSeq Adapter, Index 12 (97% over 38bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT444020.12415148449547823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)