FastQCFastQC Report
Thu 9 May 2024
EGAF00007438843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007438843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33795781
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCATACAATCTCGTATG446570.13213779554317742TruSeq Adapter, Index 22 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)