FastQCFastQC Report
Fri 3 May 2024
EGAF00007449701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007449701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70375803
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGGCATAAAAGTAAGGATGTCTTCTGGCAATTTCATATAAGTATTTT1976350.2808280567683185No Hit
GTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATT1421500.20198703807329915No Hit
GGGGCATAAAAGTAAGGATGTCTTCTGGCAATTTCATATAAGTATTTTTT1344900.19110261519857896No Hit
CGGGGCATAAAAGTAAGGATGTCTTCTGGCAATTTCATATAAGTATTTTT1264700.17970665286760565No Hit
CTCCATTTCTATCAAAAGTTCTGTGGGTCCCATCCTGGTAAGCTGGCTAA970280.13787125100370082No Hit
CCCAGGTATTTCATCAGCAGCACCCAGCTGGACAGCTTCTTACAGTGCTG881540.12526180340706022No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT843510.11985795742891915No Hit
GGGACGATTAGTTTTAGCATTGGAGTAGGTTTAGGTTATGTACGTAGTCT768370.10918099222256832No Hit
GTGGGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGT704160.10005711764311948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)