FastQCFastQC Report
Wed 15 May 2024
EGAF00007449807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007449807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80518001
Total Bases6 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG1535350.1906840682743726Illumina Single End PCR Primer 1 (100% over 50bp)
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG1004230.12472117880820216No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCGCTCATTCATCGACCT884240.10981892111305645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)