FastQCFastQC Report
Fri 13 Jan 2023
EGAF00007456948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007456948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77734159
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTTTACGAGCAGTGGTAGAAGCAGCGGTGGTTGCAGTGGTAGGAGCAGCAGTGGTCGCAGTGGTTGCAGCAGC1568750.20180960599316447No Hit
GGTAGAAGCAGCGGTGGTTGCAGTGGTAGGAGCAGCAGTGGTCGCAGTGGTTGCAGCAGCAGTGGTTTCAGCATC1136140.1461571096433937No Hit
CTGGAATGTCTTTACGAGCAGTGGTAGAAGCAGCGGTGGTTGCAGTGGTAGGAGCAGCAGTGGTCGCAGTGGTTG860120.11064891047448007No Hit
GGCAAGGTAAGTAGTTGGATGAAATCACAGGAAGCATGAATAGTTGTGACCAATTGCAGAAGACTCAAGCTGATT798710.10274890862329905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)