FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007456949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007456949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77734159
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTCTTAGGCTTTGAAGCATTTTTGTCTGTGCTCCCTGATCTTCAGGTCACCACCATGAAGTTCTTAGCAGTC2033840.26164044561156186No Hit
CTTAGGCTTTGAAGCATTTTTGTCTGTGCTCCCTGATCTTCAGGTCACCACCATGAAGTTCTTAGCAGTCCTGGT1682950.2165007020915991No Hit
CTTTGAAGCATTTTTGTCTGTGCTCCCTGATCTTCAGGTCACCACCATGAAGTTCTTAGCAGTCCTGGTACTCTT1452470.18685093126176358No Hit
GCATTTTTGTCTGTGCTCCCTGATCTTCAGGTCACCACCATGAAGTTCTTAGCAGTCCTGGTACTCTTGGGAGTT1411470.18157654474656373No Hit
AGCATTTTTGTCTGTGCTCCCTGATCTTCAGGTCACCACCATGAAGTTCTTAGCAGTCCTGGTACTCTTGGGAGT1037270.1334381195273496No Hit
ATTTTTGTCTGTGCTCCCTGATCTTCAGGTCACCACCATGAAGTTCTTAGCAGTCCTGGTACTCTTGGGAGTTTC977860.12579540482325152No Hit
CTTCAGGTCACCACCATGAAGTTCTTAGCAGTCCTGGTACTCTTGGGAGTTTCCATCTTTCTGGTCTCTGCCCAG944980.12156560412520832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)