FastQCFastQC Report
Fri 3 May 2024
EGAF00007457043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007457043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60727926
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTATGGCCCGGGGGATCCTAGAGACCATTCGCGATTCCATGAGACTCCA697050.11478244786426593No Hit
GGGGGATCCTAGAGACCATTCGCGATTCCATGAGACTCCAAGGGTTCTGC662880.10915571198660727No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCGTCTTCAGAGGGGGATA653140.10755183702469931No Hit
GGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTG622950.10258048331833365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)