FastQCFastQC Report
Thu 2 May 2024
EGAF00007457161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007457161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65362814
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGACACCAGAGCCTTCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGCC2343720.3585708534519337No Hit
CCAGAGCCTTCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGCCCTGCTG1852820.28346698781971047No Hit
CACCAGAGCCTTCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGCCCTGC1360530.20815046304462964No Hit
AGTGACACCAGAGCCTTCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGC1251160.19141770732208685No Hit
GTGACACCAGAGCCTCCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGCC1224270.18730374735702168No Hit
CAGAGCCTTCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGCCCTGCTGG1133560.17342582588320019No Hit
TGACACCAGAGCCTTCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGCCC838760.12832372853469864No Hit
GACACCAGAGCCTTCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGCCCT829890.12696668781732684No Hit
AGTGACACCAGAGCCTCCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGC735910.11258848188512814No Hit
CACCAGAGCCTCCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGCCCTGC689300.10545751595088915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)