FastQCFastQC Report
Fri 13 Jan 2023
EGAF00007457190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007457190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68190808
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTATCCTATCTCGTAT17248772.5294860855732932TruSeq Adapter, Index 6 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTATCCTATCGCGTAT8350831.2246269321225818TruSeq Adapter, Index 6 (97% over 37bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1150390.16870162324517404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)