FastQCFastQC Report
Fri 13 Jan 2023
EGAF00007462200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007462200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56965333
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCATCTTCCAGTAATTCGCCAAAATGACGAACACAAAGGGAAAGAGG1076970.1890570884576414No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT889670.1561774421646934No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG726190.12747928639335787No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT634980.11146779393003811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)