FastQCFastQC Report
Thu 9 May 2024
EGAF00007498827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007498827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5970323
Total Bases603 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC78

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTTCTCTCCTCCCCCCTCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCC218940.36671382771082905No Hit
TCTTTCTCTCCCCCCCCCTCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCC162380.27197858474323755No Hit
TCTTTCTCTCCTCCCCCCTCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCC103620.17355844901523754No Hit
TCTTTCTCTCCTCCCCCCTCCTCCCCCCTCCCCCCCTCCCCCCCCCCCCC79130.13253889278687267No Hit
TCTTTCTCTCCTCCCCCCTCCTCCCCCCTCCCCCCTCCCCCCCCCCCCCC76760.12856925831315993No Hit
TCTTTCTCTCCCCCCCCCTCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCC73660.1233769094234935No Hit
TCTTTCCCTCCCCCCCCCTCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCC72400.1212664708425323No Hit
TCTTTCTCTCCTCCCCCCCCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCC70130.1174643314942927No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)