FastQCFastQC Report
Wed 8 May 2024
EGAF00007498859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007498859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences924332
Total Bases93.3 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC76

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTTCTCTCCTCCCCCCTCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCC20820.22524374358996552No Hit
TCTTTCTCTCCCCCCCCCTCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCC14430.15611273871292997No Hit
TCTTTCTCTCCTCCCCCCTCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCC12470.13490823643452785No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)