FastQCFastQC Report
Fri 10 May 2024
EGAF00007532368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007532368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37638712
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1905090.5061517514201868No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN469290.12468279998529173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)