FastQCFastQC Report
Thu 2 May 2024
EGAF00007532376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007532376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36239805
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1007060.2778878087230326No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN694030.19151041237666705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)