FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007539159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007539159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72912658
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTGATTAGCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT2295270.3147971920047134No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAAACATCGATCTCGTAT1344050.18433699125328828TruSeq Adapter, Index 5 (97% over 36bp)
AGTGATTAGCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1012280.1388346039997609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)