FastQCFastQC Report
Fri 16 Dec 2022
EGAF00007539198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007539198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67860434
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT1289670.1900474140793146No Hit
CTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCT1261050.1858299344209912No Hit
GCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAA743980.10963384053806671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)