FastQCFastQC Report
Wed 8 May 2024
EGAF00007543458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173177
Total Bases8.8 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16290.9406560917442847No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7580.4377024662628409No Hit
GTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTAC6980.40305583304942344No Hit
ATTGTTGATATGGACTCTAGAATAGGATTGCGCTGTTATCCCTAGGGTAA2760.15937451278172043No Hit
CCTCACATACACATGTTTATATGTAGAATATGAGAAATTAACAACGATGA2490.14378352783568255No Hit
GCAACAATAACTGGAGAGATACATATATTTCATATATATAGAAATGACGG2150.12415043568141267No Hit
CCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCTGTG2140.12357299179452236No Hit
GGTCTCATTTAGGGCATCCTCTTTCTTCTTCTTGGCTTCTTCTAGGTTGC1930.11144667016982623No Hit
GATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATT1870.1079820068484845No Hit
ACATGAGTAGGCGTTCTCCTTGTAATCTCTCCTTCTTCTTCTCTTTCGAA1870.1079820068484845No Hit
CCTTTAATAGCGGCTGCACCATCGGGATGTCCTGATCCAACATCGAGGTC1820.10509478741403304No Hit
ATTATTGGGTGGGGGTAAACATCGAACGGATCAACACCCCTGCACCAACC1750.101052680205801No Hit
ACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCTCGCC1740.10047523631891071No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)