FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543268
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT10350.19051370594255504No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA9570.17615615129181178No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC8930.16437559362966345No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA7640.1406304070918957No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG7320.13474012826082155No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6900.1270091372950367No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC5590.10289580833032683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)