FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2498
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA140.5604483586869495No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT140.5604483586869495No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC130.5204163330664532No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC60.24019215372297836No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.24019215372297836No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC60.24019215372297836No Hit
GTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTACG60.24019215372297836No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC50.20016012810248196No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC50.20016012810248196No Hit
GGTAGAGGGGGTGCTATAGGGTAAATACGGGTCCTATTTCAAAGATTTTTA50.20016012810248196No Hit
CCTCAGAGAGGTTCATCTTGCTAGTGATAGTGGAGAAAATCAATCTCTTCT50.20016012810248196No Hit
CCCCACAGGAGCCCTGTGGTTACAGAGCTGCAGGCTCAAGGAGCCCATGGG50.20016012810248196No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC40.16012810248198558No Hit
CCCAATTAGGAGGGCACTGGCCCCCAACAGGCATCACCCCGCTAAATCCCC40.16012810248198558No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG40.16012810248198558No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA40.16012810248198558No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATG40.16012810248198558No Hit
CCAATTAGGAGGGCACTGGCCCCCAACAGGCATCACCCCGCTAAATCCCCT30.12009607686148918No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC30.12009607686148918No Hit
CCTATGATGGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGAGCT30.12009607686148918No Hit
CCAAGGGAGGGAGACTGAGGCTCAGCCTGGGACTCAGCAGGGCAGGTGATC30.12009607686148918No Hit
GCTGTGGGGATAGTGAGGCATCGCAATGTAAGACTCGGGATTAGTACACAC30.12009607686148918No Hit
GGTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTAT30.12009607686148918No Hit
CCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCACGTTCTCCT30.12009607686148918No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC30.12009607686148918No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)