FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences818422
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT27770.33931150433394996No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG20530.25084858422671924No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA20100.24559457101593066No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA18710.22861066784617226No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC17210.21028271478528193No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATG15710.19195476172439158No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC14090.17216057241862998No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC13400.16372971401062045No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10060.1229194718617046No Hit
GCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCC10000.12218635373926899No Hit
CCTCCGGCGGGGTCGAAGAAGGTGGTGTTGAGGTTGCGGTCTGTTAGTAGT9100.11118958190273479No Hit
CCTAATGACCTCCGGCCTAGCCATGTGATTTCACTTCCACTCCATAACGCT8820.10776836399803524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)