FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences280119
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4320.1542201707131612No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT3970.14172548095630785No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATG3600.1285168089276343No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG3310.11816406598624156No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC2870.10245645600619738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)