FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences223845
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3170.14161585025352363No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA3150.14072237485760236No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC2410.10766378520851481No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA2300.10274967053094776No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT2290.10230293283298711No Hit
GAGATAGGTAGGAGTAGCGTGGTAAGGGTGATGAGTGTGGGGAGGAATGGG2260.10096271973910517No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)