FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences199465
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28761.4418569673877624No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11800.5915824831424059No Hit
GTCTTAGCTTGTTTTTCATTTTCTATCTGAAACTCTTGACAATATTTTCAT10970.549971172887474No Hit
GAAAAGTAGGAAGCAGAAGAAAAAAGACAAGCTAGGAAACAAAAAGCTAAG7780.39004336600406087No Hit
GCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACATGACGGAGGTTGAGA7420.3719950868573434No Hit
CCTACTTTTCAGGTTTAAATTTATCTTTTTTCTTCTAAAAGTATGTTTTTA7170.3594615596721229No Hit
CCCGTACTTCTGTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCCAAA7000.350938761186173No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA6120.30682074549419697No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA5830.29228185395934125No Hit
AGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGT5220.26170004762740334No Hit
CCTCATGCTACTCTTCTAAGTCTTCATATTTTCTCTTAAAATCTTAAGCTA4480.22460080715915073No Hit
TCGGTTTAATCTCTTTTTAAAAGATCGCCTTCAAATTATTTTAATCACCTA4080.20454716366279801No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAC3730.18700022560348933No Hit
CATCTTCTCAAGCTTTACCTTCTAACTTCTGCACCACCAGAAATTAAATTG3220.16143183014563958No Hit
ATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTC3180.1594264657960043No Hit
GAGTGAATGGGGCGGTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3080.15441305492191615No Hit
GTGAATGGGGAGCGGTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2840.14238086882410447No Hit
ATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAAT2750.1378687990374251No Hit
ACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAG2720.13636477577519865No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA2560.12834331837665755No Hit
GCTAAGACAAGTATTGGAGAAGTATAGAAGATAGAAAAATATAAAGCCAAA2500.12533527185220464No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACC2420.1213245431529341No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA2360.11831649662848119No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGA2360.11831649662848119No Hit
GAGTGAATGGGGCGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2350.11781515554107236No Hit
GAGTGAATGGGGAGCGGTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2330.11681247336625473No Hit
CTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGATTAAA2320.1163111322788459No Hit
GAGTGAATGGGGGCTCACACCTATAATCCCAGCACTTTGGGAGGCCGAGGC2100.10528162835585189No Hit
TGTGTCGAGGGCTGACTTTCAATAGATCGCAGCGAGGGAGCTGCTCTGCTA2080.10427894618103427No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAC2060.10327626400621663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)