FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007543562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences997188
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24250.2431838329382223No Hit
GCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACATGACGGAGGTTGAGA16050.16095259870756567No Hit
CCCGTACTTCTGTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCCAAA12240.12274515938819962No Hit
CCTCATGCTACTCTTCTAAGTCTTCATATTTTCTCTTAAAATCTTAAGCTA10960.10990906428878006No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10770.10800370642245996No Hit
GTCTTAGCTTGTTTTTCATTTTCTATCTGAAACTCTTGACAATATTTTCAT10500.10529609261242615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)