FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1272356
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTACGTTTACCTGTCCATGTCTTACTACTTTGACCGCGATGATGTGGCTT48730.3829902951689621No Hit
CCATTTGTGTGACTTCATTGAGACACATTACCTGAATGAGCAGGTGAAAGC33730.2650987616673321No Hit
GCTCATTCAGGTAATGTGTCTCAATGAAGTCACACAAATGGGGGTCATTTT25350.19923669161775476No Hit
GTCATCACAGTCTGGTTTCTTGATATCCTGAAGGAAGATTCGGCCACCTCG24370.19153444476231496No Hit
GCTCTCCCAGTCATCACAGTCTGGTTTCTTGATATCCTGAAGGAAGATTCG23060.18123858416983926No Hit
CACAAATGGGGGTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGT22850.17958810270081643No Hit
ACACAAATGGGGGTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAG22030.17314336553606066No Hit
GCCATCAACCGCCAGATCAACCTGGAGCTCTACGCCTCCTACGTTTACCTG21680.1703925630876893No Hit
TCTCATGAGGAGAGGGAACATGCTGAGAAACTGATGAAGCTGCAGAACCAA20780.1633190710775915No Hit
ACGGCTATGGGGAAATTAGCCCGAGGCTTAGCTTTCATTATCACTGTCTCC19500.15325899355211905No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT19210.1509797572377542No Hit
ACTGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCATTACATT17270.13573245223821007No Hit
CCTCATGAGATTGGTGAAGAAAGTATTTGGCAAAGTTCTTCAAAGCCACAT17270.13573245223821007No Hit
ATTCTTTGATGGCTTTCACCTGCTCATTCAGGTAATGTGTCTCAATGAAGT16720.1314097626764836No Hit
AACATGCATGCACTGCCTTGGTGACCAGGGAAGTCACCCCACGGCTATGGG16690.13117397960948038No Hit
GGTTTGTGGAAGTCGCGTTCTTTACATCTGGGAGCGGGGCTGTCCCAGCAT16220.12748004489309597No Hit
TCAAAGAATTGGGTGACCACGTGACCAACTTGCGCAAGATGGGAGCGCCCG14860.11679121252228152No Hit
GAATGAGCAGGTGAAAGCCATCAAAGAATTGGGTGACCACGTGACCAACTT13940.10956053180084818No Hit
CCTTGGTGACCAGGGAAGTCACCCCACGGCTATGGGGAAATTAGCCCGAGG13790.10838161646583189No Hit
GCCCTCCGTCACCTCTTCACCGCACCCTCGGACTGCCCCAAGGCCCCCGCC13410.10539503095045727No Hit
CCTGAATGAGCAGGTGAAAGCCATCAAAGAATTGGGTGACCACGTGACCAA12740.10012920912071778No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)