FastQCFastQC Report
Wed 8 May 2024
EGAF00007543600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences843993
Total Bases43 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTACTTTGCAAGGGGCCCTTCAGAAGTCGCTGGGCTCAGAAGGCTCTTA18690.2214473342788388No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13670.16196816798243588No Hit
CCTCTCTCTGGGCTTCTATTTCGACCGCGATGATGTGGCTCTGGAAGGCG12790.15154154122131344No Hit
GCTGAAGATGAGTGGGGTAAAACCCCAGACGCCATGAAAGCTGCCATGGC11900.14099643006517826No Hit
CCTACACCTACCTCTCTCTGGGCTTCTATTTCGACCGCGATGATGTGGCT9860.11682561348257628No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC9640.11421895679229567No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT9290.11007200296684926No Hit
CCTGCCAGCACCGTTTTTGTGGTTAGCTCCTTCTTGCCAACCAACCATGA9230.10936109659677273No Hit
ACCTCTCTCTGGGCTTCTATTTCGACCGCGATGATGTGGCTCTGGAAGGC9200.10900564341173445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)