FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences146466
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23521.60583343574618No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9740.6650007510275422No Hit
GCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACATGACGGAGGTTGAGA8520.5817049690713203No Hit
GTCTTAGCTTGTTTTTCATTTTCTATCTGAAACTCTTGACAATATTTTCAT7470.5100159764040801No Hit
CCCGTACTTCTGTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCCAAA6280.42876845138120795No Hit
CCTCATGCTACTCTTCTAAGTCTTCATATTTTCTCTTAAAATCTTAAGCTA5570.3802930372919312No Hit
CCTACTTTTCAGGTTTAAATTTATCTTTTTTCTTCTAAAAGTATGTTTTTA5260.35912771564731744No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA5080.3468381740472191No Hit
TCGGTTTAATCTCTTTTTAAAAGATCGCCTTCAAATTATTTTAATCACCTA4970.33932789862493684No Hit
GAAAAGTAGGAAGCAGAAGAAAAAAGACAAGCTAGGAAACAAAAAGCTAAG4840.3304521185804214No Hit
AGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGT4580.3127005584913905No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA4140.2826594568022613No Hit
ACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAG3710.2533011074242486No Hit
ATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTC3290.22462551035735256No Hit
ATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAAT2920.19936367484603934No Hit
CTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGATTAAA2350.16044679311239468No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAC2350.16044679311239468No Hit
TCTGCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTC2320.15839853617904495No Hit
GAGTGAATGGGGCGGTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2280.15566752693457866No Hit
GTGAATGGGGAGCGGTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2200.1502055084456461No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC2180.14884000382341295No Hit
AGCTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAAATACTTGAT2130.14542624226783007No Hit
ATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACTTAAACAGCTTAA2080.14201248071224723No Hit
AGTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTT2030.13859871915666433No Hit
GGTTGAGATGAAGCTTCTTCATGGAGTAAAAAATGTATTTAAAAGAAAATT1980.13518495760108148No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA1980.13518495760108148No Hit
GTTAGATATGGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGTAGGTA1950.13313670066773176No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA1940.1324539483566152No Hit
GATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTT1880.12835743448991574No Hit
GCTCTGTAGTCCTTTCTCTCAATTTTCTTTTAAATACATTTTTTACTCCAT1880.12835743448991574No Hit
GAGTGAATGGGGCGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1850.12630917755656604No Hit
GAGATAGGTAGGAGTAGCGTGGTAAGGGTGATGAGTGTGGGGAGGAATGGG1820.12426092062321631No Hit
CCATTTTCGTCTGCGTTTAGTAAATGCGTTAACTAGGCTTTAAATGACGCA1800.12289541600098315No Hit
GAGTGAATGGGGAGCGGTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1790.1222126636898666No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACC1780.12152991137875002No Hit
TCTATTGGTATTAATTCGGGGCTCTGTAGTCCTTTCTCTCAATTTTCTTTT1690.11538514057870086No Hit
GTGAATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1660.11333688364535113No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAC1650.11265413133423456No Hit
GCTAAGACAAGTATTGGAGAAGTATAGAAGATAGAAAAATATAAAGCCAAA1620.11060587440088485No Hit
GAGTGAATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGG1610.10992312208976827No Hit
CGGTTTAATCTCTTTTTAAAAGATCGCCTTCAAATTATTTTAATCACCTAC1590.10855761746753512No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC1560.10650936053418542No Hit
TAAATATAGTAGCTTAGTTTGAAAAATGTGAAGGACTTTCGTAACGGAAGT1550.10582660822306884No Hit
GAGTGAATGGGGAGCGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1550.10582660822306884No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC1520.10377835128971911No Hit
CCTGCGTCATGGATTTCAAGGTCTTTTAATCACCTTCGGTTTAATCTCTTT1490.1017300943563694No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)