FastQCFastQC Report
Wed 8 May 2024
EGAF00007543652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences181347
Total Bases9.2 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28941.595835607978075No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12380.6826691370687136No Hit
GTCTTAGCTTGTTTTTCATTTTCTATCTGAAACTCTTGACAATATTTTCA10530.5806547668282354No Hit
GCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACATGACGGAGGTTGAG9510.5244090059388906No Hit
GAAAAGTAGGAAGCAGAAGAAAAAAGACAAGCTAGGAAACAAAAAGCTAA8740.48194897075771864No Hit
CCTACTTTTCAGGTTTAAATTTATCTTTTTTCTTCTAAAAGTATGTTTTT7090.3909631810837786No Hit
CCCGTACTTCTGTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCCAA6520.3595317264691448No Hit
CCTCATGCTACTCTTCTAAGTCTTCATATTTTCTCTTAAAATCTTAAGCT5540.3054916816931077No Hit
TCGGTTTAATCTCTTTTTAAAAGATCGCCTTCAAATTATTTTAATCACCT5340.2944631011265695No Hit
AGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAG4820.2657887916535702No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA4500.24814306274710912No Hit
ACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAA3480.1918973018577644No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA3370.18583158254616838No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC3310.18252300837620694No Hit
ATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAA3170.17480300197963022No Hit
ATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTT3110.17149442780966875No Hit
CATCTTCTCAAGCTTTACCTTCTAACTTCTGCACCACCAGAAATTAAATT3060.16873728266803423No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC3050.1681858536397073No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC2880.15881156015814984No Hit
GCTAAGACAAGTATTGGAGAAGTATAGAAGATAGAAAAATATAAAGCCAA2680.14778297959161166No Hit
CTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGATTAA2530.13951154416670802No Hit
ATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACTTAAACAGCTTA2420.13344582485511203No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA2360.13013725068515059No Hit
GAGTGAATGGGGCGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2200.12131438623192004No Hit
TCTGCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTT2130.11745438303363165No Hit
GTCCTTTTAGTAGCTTTTTGATGTGATTTTTAACCAACTTCCCCTTCTAG2120.11690295400530475No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC2110.11635152497697784No Hit
GAGTGAATGGGGCGGTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2110.11635152497697784No Hit
GCTCTGTAGTCCTTTCTCTCAATTTTCTTTTAAATACATTTTTTACTCCA1990.10973437663705493No Hit
GATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTT1980.10918294760872801No Hit
CCATTTTCGTCTGCGTTTAGTAAATGCGTTAACTAGGCTTTAAATGACGC1970.10863151858040111No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1940.10697723149542039No Hit
GGTTGAGATGAAGCTTCTTCATGGAGTAAAAAATGTATTTAAAAGAAAAT1880.10366865732545892No Hit
CGGTTTAATCTCTTTTTAAAAGATCGCCTTCAAATTATTTTAATCACCTA1860.1025657992688051No Hit

[WARN]Adapter Content

Adapter graph