FastQCFastQC Report
Wed 8 May 2024
EGAF00007543666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences752975
Total Bases38.4 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCCCAGTTCCTGCACCCTTCTCTCCCTGTCTCTTATACACATCTCCGA158632.1067100501344664No Hit
CCTGAGCCACTACCATGCTGCTATACGAGAGACTGTCTCTTATACACATC155502.065141604966964No Hit
TACCCCAGTTCCTGCACTCTTCTCTCCCTGTCTCTTATACACATCTCCGA44790.5948404661509347No Hit
CCTGAGCCACTACCATGCTGTCTCTTATACACATCTCCGAGCCCACGAGA39350.5225937116106113No Hit
TACCCCAGTTCCTGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACA25590.33985192071449916No Hit
CCTGAGCCACTACCATGCTGCTATACGAGCTGTCTCTTATACACATCTCC24120.3203293602045221No Hit
AGTTCCTGCACCCTTCTCTCCCTGTCTCTTATACACATCTCCGAGCCCAC23940.3179388425910555No Hit
CATCATGGGCCAGAATGTTGCTGTCTCTTATACACATCTCCGAGCCCACG22480.2985490886151599No Hit
TACCCCAGTTCCTGCTTCTGCTCCCTGTCTCTTATACACATCTCCGAGCC19500.2589727414588798No Hit
GCTATACGAGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACAAG18140.24091105282379893No Hit
TACCCCAGTTCCTGCACCCTTCTGCTCCCTGTCTCTTATACACATCTCCG15160.20133470566751885No Hit
TACCCCAGTTCCTGCACTCTCGCTGTCTCTTATACACATCTCCGAGCCCA8960.11899465453700322No Hit
GCGTCAGATGTGTATAAGAGACAGCCTGAGCCACTACCATGCTGCTATAC7860.10438593578804077No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)