FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences280601
Sequences flagged as poor quality0
Sequence length51
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCCCAGTTCCTGCACCCTTCTCTCCCTGTCTCTTATACACATCTCCGAG50941.8153891112291118No Hit
CCTGAGCCACTACCATGCTGCTATACGAGAGACTGTCTCTTATACACATCT38401.368491202811109No Hit
TACCCCAGTTCCTGCACTCTTCTCTCCCTGTCTCTTATACACATCTCCGAG17550.6254432450347647No Hit
CCTGAGCCACTACCATGCTGTCTCTTATACACATCTCCGAGCCCACGAGAC15810.5634334874073863No Hit
CATCATGGGCCAGAATGTTGCTGTCTCTTATACACATCTCCGAGCCCACGA8700.31004878813689185No Hit
TACCCCAGTTCCTGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGC8020.2858150897537785No Hit
AGTTCCTGCACCCTTCTCTCCCTGTCTCTTATACACATCTCCGAGCCCACG6500.2316456463091721No Hit
TACCCCAGTTCCTGCTTCTGCTCCCTGTCTCTTATACACATCTCCGAGCCC5610.19992801166068544No Hit
CCTGAGCCACTACCATGCTGCTATACGAGCTGTCTCTTATACACATCTCCG5460.19458234289970455No Hit
TACCCCAGTTCCTGCACCCTTCTGCTCCCTGTCTCTTATACACATCTCCGA5000.17818895869936316No Hit
GCGTCAGATGTGTATAAGAGACAGTACCCCAGTTCCTGCACCCTTCTCTCC3780.13471085277671854No Hit
GCTATACGAGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGCTA3630.12936518401573766No Hit
GCGTCAGATGTGTATAAGAGACAGCCTGAGCCACTACCATGCTGCTATACG3450.12295038150256056No Hit
CACCAAGTGCCATCTGGTAGCTGCTGTCTCTTATACACATCTCCGAGCCCA3300.11760471274157969No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)