FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences589757
Sequences flagged as poor quality0
Sequence length51
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCCCAGTTCCTGCACCCTTCTCTCCCTGTCTCTTATACACATCTCCGAG53720.9108836351242969No Hit
CCTGAGCCACTACCATGCTGCTATACGAGAGACTGTCTCTTATACACATCT42470.7201271031967403No Hit
TACCCCAGTTCCTGCACTCTTCTCTCCCTGTCTCTTATACACATCTCCGAG15690.2660417765282989No Hit
CCTGAGCCACTACCATGCTGTCTCTTATACACATCTCCGAGCCCACGAGAC14820.25128993805923455No Hit
CATCATGGGCCAGAATGTTGCTGTCTCTTATACACATCTCCGAGCCCACGA7820.132596984859866No Hit
TACCCCAGTTCCTGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTA7580.1285275121787448No Hit
CATCATGGGCCAGAATGTTGCAGATTACATGCGCTACTTAATGGAAGAAGA6930.11750602366737486No Hit
AGTTCCTGCACCCTTCTCTCCCTGTCTCTTATACACATCTCCGAGCCCACG6460.10953663966684585No Hit
TACCCCAGTTCCTGCTTCTGCTCCCTGTCTCTTATACACATCTCCGAGCCC6230.10563672834743801No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)