FastQCFastQC Report
Wed 8 May 2024
EGAF00007543718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522668
Total Bases26.6 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCCCAGTTCCTGCACCCTTCTCTCCCTGTCTCTTATACACATCTCCGA69321.3262721268568192No Hit
CCTGAGCCACTACCATGCTGCTATACGAGAGACTGTCTCTTATACACATC50450.9652398845921312No Hit
CCTGAGCCACTACCATGCTGTCTCTTATACACATCTCCGAGCCCACGAGA18960.36275417664750853No Hit
TACCCCAGTTCCTGCACTCTTCTCTCCCTGTCTCTTATACACATCTCCGA18650.3568230693289048No Hit
CATCATGGGCCAGAATGTTGCTGTCTCTTATACACATCTCCGAGCCCACG9640.18443830500432398No Hit
TACCCCAGTTCCTGCTTCTGCTCCCTGTCTCTTATACACATCTCCGAGCC7960.1522955298583422No Hit
TACCCCAGTTCCTGCACCCTTCTGCTCCCTGTCTCTTATACACATCTCCG7020.13431088185999526No Hit
TACCCCAGTTCCTGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACA6390.1222573411802521No Hit
AGTTCCTGCACCCTTCTCTCCCTGTCTCTTATACACATCTCCGAGCCCAC5930.11345634322361421No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)