FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559200
Sequences flagged as poor quality0
Sequence length51
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCCCAGTTCCTGCACCCTTCTCTCCCTGTCTCTTATACACATCTCCGAG75361.3476394849785407No Hit
CCTGAGCCACTACCATGCTGCTATACGAGAGACTGTCTCTTATACACATCT68161.2188841201716738No Hit
TACCCCAGTTCCTGCACTCTTCTCTCCCTGTCTCTTATACACATCTCCGAG22460.40164520743919885No Hit
CCTGAGCCACTACCATGCTGTCTCTTATACACATCTCCGAGCCCACGAGAC21920.39198855507868385No Hit
CATCATGGGCCAGAATGTTGCTGTCTCTTATACACATCTCCGAGCCCACGA11330.20261087267525035No Hit
TACCCCAGTTCCTGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACAA10850.19402718168812588No Hit
AGTTCCTGCACCCTTCTCTCCCTGTCTCTTATACACATCTCCGAGCCCACG9150.1636266094420601No Hit
CCTGAGCCACTACCATGCTGCTATACGAGCTGTCTCTTATACACATCTCCG8630.15432761087267524No Hit
TACCCCAGTTCCTGCTTCTGCTCCCTGTCTCTTATACACATCTCCGAGCCC8480.15164520743919885No Hit
TACCCCAGTTCCTGCACCCTTCTGCTCCCTGTCTCTTATACACATCTCCGA7330.13108011444921316No Hit
CATCATGGGCCAGAATGTTGCAGATTACATGCGCTACTTAATGGAAGAAGA6980.12482117310443491No Hit
GCTATACGAGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACAAGA5920.10586552217453506No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)