FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences938427
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCCCAGTTCCTGCACCCTTCTCTCCCTGTCTCTTATACACATCTCCGAG103971.1079178241887755No Hit
CCTGAGCCACTACCATGCTGCTATACGAGAGACTGTCTCTTATACACATCT88020.9379525525160722No Hit
CCTGAGCCACTACCATGCTGTCTCTTATACACATCTCCGAGCCCACGAGAC36690.39097340549664494No Hit
TACCCCAGTTCCTGCACTCTTCTCTCCCTGTCTCTTATACACATCTCCGAG27230.2901664167804208No Hit
CATCATGGGCCAGAATGTTGCTGTCTCTTATACACATCTCCGAGCCCACGA16050.17103088466124697No Hit
TACCCCAGTTCCTGCTTCTGCTCCCTGTCTCTTATACACATCTCCGAGCCC14210.15142360567204483No Hit
CATCATGGGCCAGAATGTTGCAGATTACATGCGCTACTTAATGGAAGAAGA11390.12137331939511545No Hit
AGTTCCTGCACCCTTCTCTCCCTGTCTCTTATACACATCTCCGAGCCCACG10560.1125287315902036No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCC9960.10613505365894205No Hit
TACCCCAGTTCCTGCACCCTTCTGCTCCCTGTCTCTTATACACATCTCCGA9780.10421695027956357No Hit
TACCCCAGTTCCTGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGT9780.10421695027956357No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)