FastQCFastQC Report
Wed 8 May 2024
EGAF00007543785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1313016
Total Bases66.9 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44630.3399044642258739No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20310.15468204500173646No Hit
ATTACTTTGCAAGGGGCCCTTCAGAAGTCGCTGGGCTCAGAAGGCTCTTA13700.1043399318820182No Hit
GCATATCTTCATGGCTGTGAAATTCATGGCTGTGGAATTCACGGCTGACT13660.10403528974513639No Hit

[OK]Adapter Content

Adapter graph