FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403736
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28430.7041730239562487No Hit
GAGTACATGGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAA20880.5171696356034636No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12310.304902213327521No Hit
GAGTACATGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAAA6530.16173935442962728No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC4510.11170665979749142No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC4270.10576218122733667No Hit
AGTACATGGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAAA4240.10501912140606733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)