FastQCFastQC Report
Tue 7 May 2024
EGAF00007543836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69571
Total Bases3.5 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTACATGGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAA17362.495292578804387No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17022.4464216412010753No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9511.3669488723749839No Hit
GAGTACATGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAA5660.8135573730433658No Hit
AGTACATGGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAA3910.5620157824380848No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA1630.2342930243923474No Hit
CTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTC1540.2213565997326472No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1510.21704445817941387No Hit
GAGTACATGGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAA1370.19692113093099134No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA1310.18829684782452458No Hit
GCATGAACGGGTTGCAAAAAATCGGTGGCTGCGACTGTTTATTAAAAACA1180.16961090109384658No Hit
GTACATGGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAAA1140.16386137902286874No Hit
AGTACATGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAAA1070.1537997153986575No Hit
GCAAATTGACACCGTAACTTCGGAAGAAGGTGTGCCCTATTAGTGTGAAG950.13655114918572395No Hit
GGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGA780.11211568038406808No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT770.1106782998663236No Hit
GGTATCAACGCAGAGTACATGGGCAACGACCGTACCGCAAACCGACACTG750.10780353883083468No Hit
GTATCAACGCAGAGTACATGGGGTCTTTCCGTCTTTCCGCGGGGAGATTG740.10636615831309024No Hit
TCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGT730.10492877779534576No Hit
GTTCATGCTCCGTTGTTCACTTCACACTAATAGGGCACACCTTCTTCCGA710.10205401675985684No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)