FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69571
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTACATGGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAA17322.489543056733409No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14842.133072688332782No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8411.208837015423093No Hit
GAGTACATGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAAA5650.8121199925256213No Hit
AGTACATGGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAAA3910.5620157824380848No Hit
CTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCT1510.21704445817941387No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA1430.20554541403745813No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1380.19835851144873584No Hit
GAGTACATGGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAA1370.19692113093099134No Hit
GCATGAACGGGTTGCAAAAAATCGGTGGCTGCGACTGTTTATTAAAAACAC1170.1681735205761021No Hit
GTACATGGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAAAA1140.16386137902286874No Hit
AGTACATGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAAAA1070.1537997153986575No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAT1070.1537997153986575No Hit
GCAAATTGACACCGTAACTTCGGAAGAAGGTGTGCCCTATTAGTGTGAAGT940.13511376866797947No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAT890.12792686607925716No Hit
GGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC770.1106782998663236No Hit
GGTATCAACGCAGAGTACATGGGCAACGACCGTACCGCAAACCGACACTGG750.10780353883083468No Hit
GTATCAACGCAGAGTACATGGGGTCTTTCCGTCTTTCCGCGGGGAGATTGC740.10636615831309024No Hit
TCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTC730.10492877779534576No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA730.10492877779534576No Hit
GTTCATGCTCCGTTGTTCACTTCACACTAATAGGGCACACCTTCTTCCGAA710.10205401675985684No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT700.10061663624211237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)