FastQCFastQC Report
Tue 7 May 2024
EGAF00007543839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57792
Total Bases2.9 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2410.4170127353266888No Hit
GAGTACATGGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAA2190.3789451827242525No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1490.25782115171650055No Hit
CTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTC1310.22667497231450717No Hit
GAGTACATGGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAA1190.20591085271317833No Hit
ATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG1020.17649501661129569No Hit
GCATGAACGGGTTGCAAAAAATCGGTGGCTGCGACTGTTTATTAAAAACA940.16265227021040976No Hit
GCAAATTGACACCGTAACTTCGGAAGAAGGTGTGCCCTATTAGTGTGAAG760.13150609080841638No Hit
ATTAGTGTGAAGTGAACAACGGAGCATGAACGGGTTGCAAAAAATCGGTG720.12458471760797342No Hit
GTATCAACGCAGAGTACATGGGGTCTTTCCGTCTTTCCGCGGGGAGATTG720.12458471760797342No Hit
AGTACATGGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAA700.12112403100775193No Hit
GTATCAACGCAGAGTACATGGGCAACGACCGTACCGCAAACCGACACTGG700.12112403100775193No Hit
GGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGA700.12112403100775193No Hit
GGTATCAACGCAGAGTACATGGGGTCTTTCCGTCTTTCCGCGGGGAGATT660.11420265780730898No Hit
GTTCATGCTCCGTTGTTCACTTCACACTAATAGGGCACACCTTCTTCCGA650.11247231450719822No Hit
GGTATCAACGCAGAGTACATGGGCAACGACCGTACCGCAAACCGACACTG630.10901162790697674No Hit
CACTGGTGCGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCAGGAGA620.107281284606866No Hit
ACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACTGGGACTTCAATCAA600.10382059800664453No Hit
CCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGG590.10209025470653377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)