FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences221061
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT38511.7420530984660343No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17460.7898272422544003No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA5590.25287137939301824No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA4640.20989681581102046No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG3930.17777898408131693No Hit
ACCATCGCCGGTGTCGTTGTAAAAAGTGAACCCCTCATAGCAAAGAACTTG3840.17370770963670662No Hit
TTGTATGGAGAGCGCTGATTGCCCTACCATCGCCGGTGTCGTTGTAAAAAG3790.171445890500812No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3510.15877970333980213No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG2960.13389969284496134No Hit
CATAGCAAAGAACTTGAGCTCAACCCTGAGAAGGGGAGCTAGAGATGTTGT2950.13344732901778242No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG2260.10223422494243671No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA2240.10132949728807886No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)