FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences655605
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10050.15329352277667194No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA7670.11699117608926107No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT7340.11195765743092258No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC7290.11119500308875009No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG7210.10997475614127408No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA6950.10600895356197712No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC6830.1041785831407631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)