FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences378932
Sequences flagged as poor quality0
Sequence length51
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCGAGGGGGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGACGACCCG9080.23962082906695661No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7010.1849936136298861No Hit
TCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCTCGGG6560.17311813201313164No Hit
ACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAAC6370.16810403977494642No Hit
CCCGCGAGGGGGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGACGACCC6330.1670484414090127No Hit
GGTTACGGTGCCCAATTGTGCGCTAACCTAGAACCCACAAAGGGTGTTGGT5580.14725597204775526No Hit
TACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAA5280.1393389843032523No Hit
GGGTGGAGCGGCCGTTGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAA4880.128783000643915No Hit
GCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAA4840.12772740227798127No Hit
GCCGTCGGGGCGACTGCCAGGCTCTGATGAGTAGGAGGGCGCAGCGGCCGC4630.12218551085682919No Hit
GAGTACATGGGAGGTCGGCATAGAGAAAGAGAAAGCAGAAAGAAGAAAAAG4590.12112991249089546No Hit
CCTACTCATCAGAGCCTGGCAGTCGCCCCGACGGCCGGGTGTGGGTCGCGC4530.11954651494199488No Hit
CCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCTGGAAGAGCATTG4130.10899053128265758No Hit
AGGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATCGAC4020.10608763577633983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)