FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences256829
Sequences flagged as poor quality0
Sequence length51
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10550.4107791565594228No Hit
CCGCGAGGGGGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGACGACCCG5460.2125928146743553No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4910.1911777875551437No Hit
TCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCTCGGG3850.1499051898344813No Hit
CCCGCGAGGGGGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGACGACCC3800.14795836918728025No Hit
CCGCGAGGGGGCATTCTACGCCCGTAGCCCAATCGGCACGCGACTGCCCGC3200.12459652142086759No Hit
GAGTACATGGGAGGTCGGCATAGAGAAAGAGAAAGCAGAAAGAAGAAAAAG3090.12031351599702526No Hit
ACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAAC2990.11641987470262315No Hit
GGTTACGGTGCCCAATTGTGCGCTAACCTAGAACCCACAAAGGGTGTTGGT2860.11135814101990041No Hit
TACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAA2760.10746449972549828No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)