FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007543997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007543997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences299452
Sequences flagged as poor quality0
Sequence length51
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7480.24978961569800837No Hit
CCGCGAGGGGGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGACGACCCG5270.1759881383326877No Hit
ACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAAC4850.16196251819991184No Hit
TCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCTCGGG3850.12856818455044547No Hit
GAGTACATGGGGGGTATCGACGATTACAAAAAAAAAAAAAAAAAAAAAAAA3740.12489480784900418No Hit
TACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAA3730.12456086451250951No Hit
CCCGCGAGGGGGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGACGACCC3530.11788199778261625No Hit
GAGTACATGGGAGGTCGGCATAGAGAAAGAGAAAGCAGAAAGAAGAAAAAG3380.11287284773519629No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3360.11220496106220695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)