FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences253677
Sequences flagged as poor quality0
Sequence length51
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5820.22942560815525254No Hit
CCGCGAGGGGGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGACGACCCG5810.22903140607938444No Hit
ACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAAC4370.1722663071543735No Hit
CCCGCGAGGGGGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGACGACCC4200.16556487186461524No Hit
TACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAA3830.1509793950574944No Hit
TCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCTCGGG3500.13797072655384604No Hit
CCGCGAGGGGGCATTCTACGCCCGTAGCCCAATCGGCACGCGACTGCCCGC2900.11431860200175814No Hit
GGGTGGAGCGGCCGTTGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAA2720.10722296463613179No Hit
GAGTACATGGGAGGTCGGCATAGAGAAAGAGAAAGCAGAAAGAAGAAAAAG2630.10367514595331859No Hit
GCCGTCGGGGCGACTGCCAGGCTCTGATGAGTAGGAGGGCGCAGCGGCCGC2560.10091573142224167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)