FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences324366
Sequences flagged as poor quality0
Sequence length51
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7900.24355203689659213No Hit
CCGCGAGGGGGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGACGACCCG6450.1988494478459518No Hit
ACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAAC5810.17911864992015192No Hit
TACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAA4900.15106392161940524No Hit
TCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCTCGGG4750.1464395158555459No Hit
CCCGCGAGGGGGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGACGACCC4000.12331748703624917No Hit
GAGTACATGGGAGGTCGGCATAGAGAAAGAGAAAGCAGAAAGAAGAAAAAG3860.11900137498998045No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3630.11191061948539613No Hit
CCGCGAGGGGGCATTCTACGCCCGTAGCCCAATCGGCACGCGACTGCCCGC3620.11160232576780549No Hit
GGTTACGGTGCCCAATTGTGCGCTAACCTAGAACCCACAAAGGGTGTTGGT3320.10235351424008682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)