FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165549
Sequences flagged as poor quality0
Sequence length51
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4830.2917565192178751No Hit
CCGCGAGGGGGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGACGACCCG4220.2549094225878743No Hit
TCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCTCGGG3000.1812152293278727No Hit
GAGTACATGGGAGGTCGGCATAGAGAAAGAGAAAGCAGAAAGAAGAAAAAG2800.16913421403934786No Hit
CCCGCGAGGGGGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGACGACCC2730.16490585868836416No Hit
ACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAAC2690.1624896556306592No Hit
TACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAA2690.1624896556306592No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2010.12141420364967472No Hit
CCTACTCATCAGAGCCTGGCAGTCGCCCCGACGGCCGGGTGTGGGTCGCGC1960.1183939498275435No Hit
GCTATCATGAGGGAGCGGGTCGGGGACCGGCTGCCAAGCTTCACAGAGCAG1950.11778989906311726No Hit
GCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAA1820.10993723912557612No Hit
TGTATAGCCTATTATTCTTCAAGAAAACATGTTTTATTATTGATGAGGTGC1740.10510483301016617No Hit
CCTTCCAGGGGACTTGGGCCCGGTCCGCCGCTGAGGACGCTTCTACAGACT1690.10208457918803496No Hit
GGTTACGGTGCCCAATTGTGCGCTAACCTAGAACCCACAAAGGGTGTTGGT1660.10027242689475624No Hit
CCGCGAGGGGGCATTCTACGCCCGTAGCCCAATCGGCACGCGACTGCCCGC1660.10027242689475624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)