FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85974
Sequences flagged as poor quality0
Sequence length51
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTCCAGGGGAGGTTCTTGTTCCCAGTTCTTACAATCTACATTCAAAAGA3770.4385046642008049No Hit
GCTATCATGAGGGAGCGGGTCGGGGACCGGCTGCCAAGCTTCACAGAGCAG3190.37104240816991185No Hit
CCTCAGAGGGTAGGTCTCAAATAACCCGGCCTACGGTAACAGCGATCTTCC2390.2779910205410938No Hit
CATGATAGCTGGGTAATCTCCCCGTGTTAAGGGATCCATGTACCATCCAAA2080.24193360783492682No Hit
CCTCACATACACATGTTTATATGTAGAATATGAGAAATTAACAACGATGAA1820.21169190685556097No Hit
ACATGAGTAGGCGTTCTCCTTGTAATCTCTCCTTCTTCTTCTCTTTCGAAC1790.2082024798194803No Hit
GATATATAGCCATGTAAAAGTGCATGGCCATGCATGCGTGCATGGCAAAAA1720.20006048340195873No Hit
CCTAAGGAAAGATGACGGCGTAGCAACTACGTGCCCTTTTTATAAATTGCG1590.1849396329122758No Hit
TACATGAGTAGGCGTTCTCCTTGTAATCTCTCCTTCTTCTTCTCTTTCGAA1560.18145020587619512No Hit
GCCGCAGCGCCGGCTTTCTCTGCCTCCAGCCCCAGCCCCGGTGCCGCATCC1190.1384139390978668No Hit
GTGAATGGGGAGGTCGGCATAGAGAAAGAGAAAGCAGAAAGAAGAAAAAGC1090.12678251564426454No Hit
GCGCTGCGGCGGGGTTCGCCTTGTCGGAGGCCGGTGCCACAGCCGACTTTG1060.12329308860818387No Hit
CACCATAGGAGGTGCTGCAGAGCCACCGCGCGACCTGAAGATGGCACGGCC1060.12329308860818387No Hit
GCGCTGCGGCCCCAACAAAGTCGGCTGTGGCACCGGCCTCCGACAAGGCGA1030.11980366157210319No Hit
TGTATAGCCTATTATTCTTCAAGAAAACATGTTTTATTATTGATGAGGTGC1030.11980366157210319No Hit
ATTATTGGGTGGGGGTAAACATCGAACGGATCAACACCCCTGCACCAACCG980.11398794984530207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)