FastQCFastQC Report
Wed 8 May 2024
EGAF00007544077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences803007
Total Bases40.9 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTAT14770.18393363943278204No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC13800.17185404361356751No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC13600.1693634053003274No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT13570.1689898095533414No Hit
GGTAGAGGGGGTGTTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTT12720.1584045967220709No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCAT11180.13922668171012206No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGC9340.11631280922831308No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAA9240.11506749007169302No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG9140.11382217091507298No Hit
GCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACAC8180.10186710701152045No Hit
CCTATGATGGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGGGC8160.10161804318019645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)