FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences848037
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC20000.23583876646891588No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA19430.2291173616245518No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA19020.224282666911939No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT15950.1880814162589604No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC14770.17416692903729436No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG11590.13666856516873674No Hit
GGTAGAGGGGGTGTTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTTA10860.1280604501926213No Hit
CCTATGATGGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGGGCT10340.1219286422644295No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC9460.11155173653979719No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8990.10600952552777768No Hit
GCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACC8710.10270778279721285No Hit
CCTCCGGCGGGGTCGAAGAAGGTGGTGTTGAGGTTGCGGTCTGTTAGTAGT8650.1020002664978061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)